Publications, Books, Book chapters, others...
- Ballesio F, Pepe G, Ausiello G, Novelletto A, Helmer-Citterich
M, Gherardini PF (2024). Human lncRNAs harbor conserved modules embedded in different
sequence contexts. Noncoding
RNA Res., 9:1257-1270. (free-full-text)
- Pepe G, Appierdo R, Ausiello
G, Helmer-Citterich M, Gherardini PF (2024). A
meta-analysis approach to gene regulatory network inference identifies key
regulators of cardiovascular diseases. International Journal of Molecular
Sciences, 25(8):4224. (free full-text)
- Latini S, Venafra V, Massacci G, Bica V, Graziosi S, Pugliese GM, Iannuccelli M, Frioni F, Minella J, Marra J, Chiusolo P, Pepe G, Helmer-Citterich M, Fischer T, Perfetto
L, Sacco F. Unveiling the signaling network rewiring of FLT3-ITD AML improves
drug sensitivity prediction. Elife,
12:RP90532. (free full-text)
- Latini A, Borgiani A, De Benedittis G, Ciccacci C, Novelli L, Pepe G, Helmer-Citterich M, Capulli M, Perricone C, Ceccarelli F, Conti F, Ianniciello
G, Caceres J, Ottalevi R, Baldini I, Novelli G
(2024). Large-scale DNA sequencing identifies rare variants associated
with Systemic Lupus Erythematosus susceptibility in known risk genes. Gene, 13:148279.
- Candi E, Smirnov A, Lena
AM, Tosetti G, Yang X, Cappello A, Helmer
Citterich M, and Melino G. (2023). Epigenetic
priming of an epithelial enhancer by p63 and CTCF controls expression of a
skin-restricted gene XP33. Cell
Death Discovery, 9:446.
- Marchionni E, D’Apice MR, Lupo V, Lattanzi G, Mattioli
E, Lisignoli G, Gabusi E,
Pepe G, Helmer Citterich M, Campione E, Nardone AM, Spitalieri P, Pucci
N, Picchi E, Garaci F, Novelli A, Novelli G. (2023). Clinical
and functional characterization of COL2A1 p.Gly444Ser variant: from a fetal
phenotype to a previously undisclosed postnatal phenotype. Bone Rep.19:101728. (free
full-text).
- Pericoli G, Galardi A, Paolini A, Petrilli LL, Pepe G,
Palma A, Colletti M, Ferretti M, Giorda E, Levi
Mortera S, Marzano V, Burford A, Carai A, Mastronuzzi A, Mackay A, Putignani L, Jones C, Pascucci L, Peinado
H, Helmer-Citterich M, de Billy E,
Masotti A, Locatelli F, Di Giannatale A, Vinci M.
(2023). Inhibition of exosome biogenesis affects cell motility
in heterogeneous sub-populations of paediatric-type
diffuse high-grade gliomas. Cell & Biosciences, 13:207. (free-full-text)
- Cirotti C, Taddei I, Contadini C, Di
Girolamo C, Pepe G, De Bardi M, Borsellino G, Helmer-Citterich M, and Barila M. (2023). NRF2 connects Src tyrosine kinase to ferroptosis resistance in
glioblastoma". Life Science Alliance. 7(1):e202302205. (free
full-text)
- Ballarino M, Pepe G, Helmer-Citterich M, Palma A. (2023). Exploring the Landscape of
Tools and Resources for the Analysis of Long Non-Coding RNAs. Computational and
Structural Biotechnology Journal, 21:4706-4716. (free-full-text)
- Olmi L, Pepe G, Helmer-Citterich M, Canini
A, Gismondi A. (2023). Looking for Plant microRNAs in
Human Blood Samples: Bioinformatics Evidence and Perspectives. Plant Foods for
Human Nutrition, 78(2):399-496. (free-full-text)
- Pepe G, Appierdo R, Carrino C, Ballesio F, Helmer-Citterich M, Gherardini PF. (2022). Artificial
intelligence methods enhance the discovery of RNA interactions. Frontiers in
Molecular Biosciences, 9:1000205. (free full-text)
- Musella M, Guarracino A, Manduca N, Galassi C, Ruggiero
E, Potenza A, Maccafeo E, Manic G, Mattiello L,
Soliman Abdel Rehim S, Signore M, Pietrosanto M, Helmer-Citterich M, Pallocca
M, Fanciulli M, Bruno T, De Nicola F, Corleone G, Di Benedetto A, Ercolani C, Pescarmona E, Pizzuti L, Guidi F, Sperati F, Vitale S,
Schiavoni, Mattei F, De Ninno A, Businaro L, Lucarini L, Bracci L, Aricò E, Ziccheddu G, Facchiano F, Rossi S, Sanchez M, Boe A, Biffoni M, De Maria R, Vitale I and Sistigu
A (2022) Type I IFNs promote cancer cell stemness by triggering the epigenetic regulator KDM1B. Nature Immunology,
23(9):1379-1392.
- Pepe G, Carrino C, Parca L, and Helmer-Citterich M.
(2022). Dissecting the genome for drug response prediction. Methods Mol Biol. 2022;2449:187-196.
- Pepe G, Parca L, Viviani
L, Ausiello G, Helmer-Citterich
M. (2022). Variation in the co-expression profile highlights a loss of
miRNA-mRNA regulation in multiple cancer types. Noncoding RNA Res., 7(2), pp.
98–105. (free-full-text)
- Di Fraia D, Anitei M, Mackmull MT, Parca L, Behrendt L, Andres-Pons A, Gilmour D,
Helmer-Citterich M, Kaether C, Beck M, Ori A. (2022).
Conserved exchange of paralog proteins during neuronal differentiation. Life
Science Alliance 5(6):e202201397. (free-full-text)
- Pepe G, Guarracino A, Ballesio F, Parca L, Ausiello G, Helmer-Citterich M. (2022). Evaluation
of potential sponge effects of SARS genomes in human. Noncoding RNA Res.
7(1):48-53.(free-full
text)
- PDBe-KB consortium: Varadi M, Anyango S, Armstrong D, Berrisford
J, Choudhary P, Deshpande M, Nadzirin N, Nair SS,
Pravda L, Tanweer A, Al-Lazikani
B, Andreini C, Barton GJ, Bednar D, Berka K, Blundell T, Brock KP, Carazo JM, Damborsky J, David, Dey AS, Dunbrack
R, Recio JF, Fraternali F,
Gibson T, Helmer-Citterich M, Hoksza D, Hopf T, Jakubec D, Kannan N, Krivak R, Kumar M, Levy ED, London N, Macias JR, Srivatsan MM, Marks DS, Martens L, McGowan SA, McGreig JE, Modi V, Parra RG, Pepe G, Piovesan
D, Prilusky J, Putignano V,
Radusky LG, Ramasamy P, Rausch AO, Reuter N,
Rodriguez LA, Rollins NJ, Rosato A, Rubach P, Serrano L, Singh G, Skoda P, Sorzano
COS, Stourac J, Sulkowska
JI, Svobodova R, Tichshenko
N, Tosatto SCE, Vranken W,
Wass MN, Xue D, Zaidman D,
Thornton J, Sternberg M, Orengo C, Velankar S (2022). PDBe-KB:
collaboratively defining the biological context of structural data. Nucl. Acids Res 50(D1):D534-D542. (free-full text)
- Lo Iacono L, Mancini, Babicola , Pietrosanto M, Di Segni M, Lica D’Addario S, Ielpo D, Pascucci T, Cabib S, D'Amato FR, Andolina D, Helmer-Citterich M, Cifani
C, Ventura R.
(2021) Early life adversity affecting the attachment bond
alters ventral tegmental area transcriptomic patterning and behavior almost
exclusively in female mice.. Neurobiology of Stress, 15:100406. (free-full text).
- Galfrè SG, Morandin F, Pietrosanto M, Cremisi F, Helmer-Citterich
M. (2021) COTAN: Co-expression Table Analysis for scRNA-seq
data. Nucl. Acids Res. Genomics and Bioinformatics, NAR Genom Bioinform. 3(3):lqab072.(free-full text)
- Ferradini V, Parca L, Martino A, Lanzillo C, Silvetti
E, Calò L, Caselli S, Novelli G, Helmer-Citterich
M, Sangiuolo FC and Mango R (2021). Variants
in MHY7 gene cause Arrhythmogenic Cardiomyopathy. Genes, 12(6):793. (free-full text).
- Guarracino A, Pepe G, Ballesio
F, Adinolfi M, Pietrosanto M, Sangiovanni E, Vitale I, Ausiello G,
Helmer-Citterich M.(2021). BRIO: a web server for RNA
sequence and structure motif scan. Nucleic Acids Res., 49(W1):W67-W71. (free-full text).
- Martins M, Galfrè SG, Terrigno M, Pandolfini L, Appolloni I, Dunville K, Marranci A, Rizzo M, Mercatanti
A, Poliseno L, Morandin F, Pietrosanto M, Helmer
Citterich M, Malatesta P, Vignali R, Cremisi FA (2021) Eutherian-specific microRNA controls
the translation of Satb2 in a model of cortical differentiation. Stem Cell
Reports, S2213-6711(21)00215-0. (free-full
text).
- Pietrosanto M, Ausiello G, Helmer-Citterich
M. (2021). Motif Discovery from CLIP Experiments. Methods Mol Biol.2284:43-50.
- Pietrosanto M, Adinolfi M, Guarracino A, Ferrè F,
Ausiello G, Vitale I, Helmer-Citterich M
(2021). Relative Information Gain: Shannon entropy-based
measure of the relative structural conservation in RNA alignments. Nucl. Acids Res. Genomics and
Bioinformatics, NAR Genom
Bioinform. 3(1):lqab007. (free-full text)
- Latini A, Agolini
E, Novelli A, Borgiani P, Giannini R, Gravina P, Smarrazzo A, Dauri M, Andreoni M, Rogliani P, Bernardini S, Helmer-Citterich M,
Biancolella M, Novelli G. (2020). COVID-19
and Genetic Variants of Protein Involved in the SARS-CoV-2 Entry into the Host
Cells. Genes (Basel). 11(9):E1010 (free full-text)
- Helmer-Citterich M. (2020) A time for
cooperation. Commentary about the role of algorithmics and computational
biology in responding to the COVID-19 pandemic, Cell Systems 10(5):379 (free
full-text)
- Novelli G, Novelli A, Borgiani P, Cocciadiferro
D, Biancolella M, Agolini E, Pietrosanto M, Casalone
R, Helmer-Citterich M, Giardina E,
Jain S, Wei W, Eng C, Pandolfi PP. (2020). WWP1 Germline
Variants are Associated with Normocephalic Autism Spectrum Disorder. Cell
Death & Disease, 11(7):529 (free full text)
- Babicola L, Pietrosanto M, Ielpo D, D'Addario SL,
Cabib S, Ventura R, Ferlazzo F, Helmer-Citterich M, Andolina D, Lo Iacono L. (2020). RISC RNA sequencing in
the Dorsal Raphè reveals microRNAs regulatory
activities associated with behavioral and functional adaptations to chronic
stress. Brain Research, 1736:146763.
-
Orengo C, Velankar S, Wodak S, Zoete V, Bonvin AMJJ, Elofsson A, Feenstra KA, Gerloff DL, Hamelryck T, Hancock JM, Helmer-Citterich M, Hospital A, Orozco M, Perrakis
A, Rarey M, Soares C, Sussman JL, Thornton JM, Tuffery P, Tusnady G, Wierenga R, Salminen T, Schneider
B. 2020. A Community Proposal to Integrate Structural Bioinformatics Activities
in ELIXIR (3D-Bioinfo Community). F1000Res. 2020;9:ELIXIR-278 (free full text).
- PDBe-kb Consortium (Varadi M, Berrisford
J, Deshpande M, Nair SS, Gutmanas
A, Armstrong D, Pravda L, Al-Lazikani
B, Anyango S, Barton GJ, Berka K, Blundell T, Borkakoti N, Dana J, Das S,
Dey S, Di Micco P, Fraternali F, Gibson T, Helmer-Citterich M, Hoksza D, Huang LC, Jain R,
Jubb H, Kannas
C, Kannan N, Koca J, Krivak R, Kumar M, Levy ED,
Madeira F, Madhusudhan MS,
Martell HJ, MacGowan S, McGreig JE, Mir S, Mukhopadhyay A,
Parca P, Paysan-Lafosse
T, Radusky L, Ribeiro A,
Serrano L, Sillitoe I, Singh G, Skoda P,
Svobodova R, Tyzack
J, Valencia A, Villasclaras
Fernandez E, Vranken W, Wass
M, Thornton J, Sternberg M, Orengo
C, Velankar S (2020). PDBe-KB:
a community-driven resource for structural and functional annotations. Nucleic
Acids Res. 2020 Jan 8;48(D1):D344-D353 (free full-text)
- Parca L, Pepe G, Pietrosanto M, Galvan G, Galli Leonardo, Palmeri A, Sciandrone M, Ferrè F, Ausiello G, Helmer-Citterich M. (2019) .Modeling
cancer drug response through drug-specific informative genes. Sci. Rep
9(1):15222 (free full-text)
- Adinolfi M, Pietrosanto M, Parca L, Ausiello G, Ferrè F, Helmer-Citterich M. (2019). Discovering
sequence and structure landscapes in RNA interaction motifs. Nucleic Acids Res.
47(10):4958-4969 (free full-text)
- Menden MP, Wang D, Mason MJ,
Szalai B,
Bulusu KC,
Guan Y, Yu T, Kang J,
Jeon M, Wolfinger
R, Nguyen T, Zaslavskiy M, Abante J, Abecassis BS, Aben N, Aghamirzaie D, Aittokallio T, Akhtari FS, Al-lazikani B, Alam T, Allam A,
Allen C, de Almeida MP, Altarawy D, Alves V,
Amadoz A,
Anchang B,
Antolin AA, Ash JR, Aznar VR,
Ba-alawi W,
Bagheri M, Bajic
V, Ball G, Ballester PJ, Baptista D,
Bare C, Bateson M, Bender A,
Bertrand D, Wijayawardena
B, Boroevich
KA, Bosdriesz
E, Bougouffa
S, Bounova
G, Brouwer T, Bryant B,
Calaza M,
Calderone A, Calza
S, Capuzzi, S, Carbonell-Caballero
J, Carlin D, Carter H,
Castagnoli L, Celebi
R, Cesareni
G, Chang H, Chen G,
Chen H, Chen H, Cheng L,
Chernomoretz A, Chicco D,
Cho K-H, Cho S, Choi D,
Choi J, Choi K, Choi M,
Cock MD, Coker E, Cortes-Ciriano
I, Cserzö
M, Cubuk
C, Curtis C, Daele DV, Dang CC,
Dijkstra T, Dopazo
J, Draghici
S, Drosou
A, Dumontier, M, Ehrhart F,
Eid FE, ElHefnawi
M, Elmarakeby
H, van Engelen
B, Engin
HB, de Esch
I, Evelo
C, Falcao AO, Farag S,
Fernandez-Lozano C, Fisch K, Flobak A, Fornari C, Foroushani
ABK, Fotso
DC, Fourches
D, Friend S, Frigessi A, Gao F,
Gao X, Gerold
JM, Gestraud
P, Ghosh S, Gillberg J, Godoy-Lorite
A, Godynyuk
L, Godzik
A, Goldenberg A, Gomez-Cabrero
D, Gonen
M, de Graaf C, Gray H,
Grechkin M,
Guimera R,
Guney E,
Haibe-Kains B,
Han Y, Hase
T, He D,
He L, Heath LS, Hellton KH, Helmer-Citterich
M, Hidalgo MR, Hidru
D, Hill SM, Hochreiter S, Hong S,
Hovig E,
Hsueh YC, Hu Z, Huang JK,
Huang RS, Hunyady
L, Hwang J, Hwang TH,
Hwang W, Hwang Y, Isayev O, Don’t Walk OB, Jack J,
Jahandideh S,
Ji J, Jo Y, Kamola PJ, Kanev GK, Karacosta L, Karimi M,
Kaski S,
Kazanov M,
Khamis AM, Khan SA, Kiani NA, Kim A,
Kim J, Kim J, Kim K, Kim K,
Kim S, Kim Y, Kim Y,
Kirk PDW, Kitano H, Klambauer G, Knowles D, Ko M, Kohn-Luque A, Kooistra AJ, Kuenemann MA, Kuiper M,
Kurz C, Kwon M, van Laarhoven
T, Laegreid
A, Lederer S, Lee H,
Lee J, Lee YW, Lepp_aho E, Lewis R,
Li J, Li L, Liley J, Lim WK,
Lin C, Liu Y, Lopez Y,
Low J, Lysenko A, Machado D,
Madhukar N, Maeyer
DD, Malpartida
AB, Mamitsuka
H, Marabita
F, Marchal
K, Marttinen
P, Mason D, Mazaheri A, Mehmood A,
Mehreen A,
Michaut M,
Miller RA, Mitsopoulos
C, Modos
D, Moerbeke
MV, Moo K, Motsinger-Reif
A, Movva
R, Muraru
S, Muratov
E, Mushthofa
M, Nagarajan N, Nakken S, Nath A,
Neuvial P,
Newton R, Ning Z, Niz CD, Oliva B,
Olsen C, Palmeri
A, Panesar B, Papadopoulos S, Park J,
Park S, Park S, Pawitan Y, Peluso D,
Pendyala S,
Peng J, Perfetto L, Pirro S, Plevritis S,
Politi R,
Poon H, Porta E, Prellner I, Preuer K, Pujana MA, Ramnarine R,
Reid JE, Reyal
F, Richardson S, Ricketts C,
Rieswijk L,
Rocha M, Rodriguez-Gonzalvez C, Roell K, Rotroff
D, de Ruiter JR, Rukawa P, Sadacca B, Safikhani Z, Safitri F, Sales-Pardo M, Sauer S,
Schlichting M, Seoane JA, Serra
J, Shang MM, Sharma A,
Sharma H, Shen Y, Shiga M,
Shin M, Shkedy
Z, Shopsowitz
K, Sinai S, Skola D, Smirnov P,
Soerensen IF,
Soerensen P,
Song JH, Song SO, Soufan O, Spitzmueller
A, Steipe
B, Suphavilai
C, Tamayo SP, Tamborero D, Tang J,
Tanoli ZUR,
Tarres-Deulofeu M, Tegner J, Thommesen L, Tonekaboni SAM, Tran
H, Troyer ED, Truong A,
Tsunoda T,
Turu G,
Tzeng GY, Verbeke L, Videla S, Vis D,
Voronkov A,
Votis K,
Wang A, Wang H-QH, Wang P-W,
Wang S, Wang W, Wang X,
Wang X, Wennerberg, Wernisch L, Wessels L,
van Westen GJP, Westerman BA, White SR,
Willighagen E,
Wurdinger T,
Xie L, Xie S, Xu H, Yadav B,
Yau C, Yeerna H, Yin
JW, Yu M, Yu MH,
Yun SJ, Zakharov
A, Zamichos
A, Zanin
M, Zeng L, Zenil H, Zhang F,
Zhang P, Zhang W, Zhao H,
Zhao L, Zheng W, Zoufir A, Zucknick M, Jang IS,
Ghazoui Z,
Ahsen ME,
Vogel R, Neto EC, Norman T,
Tang EKY, Garnett MJ, Veroli GYD, Fawell S, Stolovitzky G, Guinney J, Dry JR, Saez-Rodriguez J,
(2019). Community assessment to advance computational prediction of
cancer drug combinations in a pharmacogenomic screen. Nat Commun. 10(1):2674.
- Parca L, Ariano B, Cabibbo A, Paoletti M, Tamburrini A,
Palmeri A, Ausiello G, Helmer-Citterich
M. (2018). Kinome-wide identification of phosphorylation networks in Eukaryotic
proteomes. Bioinformatics, 35(3):372-379 (free
full-text)
- Pietrosanto M, Adinolfi M, Casula R, Ausiello G, Ferrè
F, Helmer-Citterich M. (2017). BEAM web server: A tool
for structural RNA motif discovery. Bioinformatics, 34(6):1058-1060 (free
full-text)
- El Hachem M, Fortugno P, Palmeri A, Helmer-Citterich
M, Diociaiuti A, Proto V, Boldrini
R, Zambruno G, Castiglia D (2016). Structural Defects
of Laminin β3 N-terminus Underlie Junctional
Epidermolysis Bullosa with Altered Granulation Tissue Response. Acta Derm Venereol, 96(7):954-958 (free
full-text)
- Pietrosanto M, Mattei E, Helmer-Citterich M, Ferrè
F. (2016). A novel method for the identification of conserved structural
patterns in RNA: From small scale to high-throughput applications. Nucleic
Acids Res. 44(18):8600-8609. (free-full-text)
- Mongiardi MP, Savino M, Falchetti ML, Illi B, Bozzo F, Valle C, Helmer-Citterich M, Ferrè F, Nasi S, Levi A. (2016). c-MYC inhibition impairs
hypoxia response in glioblastoma multiforme. Oncotarget,
7(22):33257-71 (free full-text)
- Tabolacci E, Mancano G, Lanni S, Palumbo F, Goracci M, Ferrè F, Helmer-Citterich
M, Neri G. (2016). Genome-wide methylation
analysis demonstrates that 5-aza-2-deoxycytidine treatment does not cause
random DNA demethylation in fragile X syndrome cells. Epigenetics Chromatin.
2016 Mar 24;9:12. (free full-text)
- Mango R, Luchetti A, Sangiuolo R, Ferradini V, Briglia
N, Giardina E, Ferrè F, Helmer Citterich M, Romeo F, Novelli G,
Sangiuolo F. (2016). Next Generation Sequencing and
Linkage Analysis for the Molecular Diagnosis of a Novel Overlapping Syndrome
Characterized by Hypertrophic Cardiomyopathy and Typical Electrical Instability
of Brugada Syndrome. Circ J; 80(4):938-49 (free
full-text)
- Ison J, Rapacki K, Ménager H, Kalaš M, Rydza E, Chmura P,
Anthon C, Beard N, Berka K, Bolser
D, Booth T, Bretaudeau A, Brezovsky
J, Casadio R, Cesareni G,
Coppens F, Cornell M, Cuccuru G, Davidsen
K, Vedova GD, Dogan T, Doppelt-Azeroual
O, Emery L, Gasteiger E, Gatter
T, Goldberg T, Grosjean M, Grüning B, Helmer-Citterich
M, Ienasescu H, Ioannidis V, Jespersen MC,
Jimenez R, Juty N, Juvan P,
Koch M, Laibe C, Li JW, Licata L, Mareuil
F, Mičetić I, Friborg RM,
Moretti S, Morris C, Möller S, Nenadic
A, Peterson H, Profiti G, Rice P, Romano P, Roncaglia P, Saidi R, Schafferhans A, Schwämmle V,
Smith C, Sperotto MM, Stockinger H, Vařeková RS, Tosatto SC, de la
Torre V, Uva P, Via A, Yachdav
G, Zambelli F, Vriend G, Rost B, Parkinson H, Løngreen P, Brunak S. (2015). Tools and data services registry: a
community effort to document bioinformatics resources. Nucleic Acids Res; 44(D1):D38-47 (free full-text)
- Morini E, Rizzacasa B, Pucci S, Polidoro C,
Ferrè F, Caporossi D, Helmer-Citterich
M, Novelli G, Amati F. (2015). The human
rs1050286 polymorphism alters LOX-1 expression through modifying miR-24
binding. J Cell Mol Med., 20(1):181-7 (free full-text)
- Creixell P, Schoof EM, Simpson CD, Longden J, Miller CJ, Lou HJ,
Perryman L, Cox TR, Zivanovic N, Palmeri
A, Wesolowska-Andersen A, Helmer-Citterich M, Ferkinghoff-Borg J, Itamochi H, Bodenmiller B, Erler JT, Turk BE,
Linding R. (2015). Kinome-wide
Decoding of Network-Attacking Mutations Rewiring Cancer Signaling. Cell, pii: S0092-8674(15)01108-3.
- Ferrè F, Colantoni A, Helmer-Citterich
M. (2015). Revealing protein-lncRNA interaction. Brief Bioinform,
17(1):106-16. (free
full-text)
- Mattei E, Pietrosanto M, Ferrè F, Helmer-Citterich
M. (2015). Web-Beagle: a web server for the alignment of RNA secondary
structures. Nucleic Acids Res., 43(W1):W493-7 (free
full-text)
- Mattei E, Helmer-Citterich
M, Ferrè F. (2015). A simple protocol for the
inference of RNA global pairwise alignments. Methods Mol
Biol.;1269:39-47.
- Cianfanelli V, Fuoco C, Lorente
M, Salazar M, Quondamatteo F, Gherardini PF, De Zio
D, Nazio F, Antonioli M, D'Orazio M, Skobo T, Bordi M, Rohde M, Dalla
Valle L, Gretzmeier C, Helmer-Citterich M, Dengjel J, Fimia GM, Piacentini
M, Di Bartolomeo S, Velasco G, and Cecconi F. (2015). AMBRA1
links autophagy to cell proliferation and tumorigenesis by promoting c-MYC
dephosphorylation and degradation. Nature Cell Biology, 17:20-30.
- Palmeri A, Ferrè F, Helmer-Citterich M. (2014). Exploiting
holistic approaches to model specificity in protein phosphorylation. Front
Genet. 5:315 (free
full-text)
- Ferrè F, Palmeri A, Helmer-Citterich M. (2014). Computational
methods for analysis and inference of kinase/inhibitor relationships. Front
Genet. 5:196 (free
full-text).
- Palmeri A, Helmer-Citterich
M, Gherardini PF (2014). A proteome-wide
domain-centric perspective on protein phosphorylation. Mol. Cell.
proteomics:13,9; 2198-2212 (free full-text).
- Mattei E, Ausiello G, Ferrè F, Helmer-Citterich
M. (2014). A novel approach to represent and compare RNA secondary
structures. Nucleic Acids Res. 2014 Apr 21. [Epub
ahead of print] (free
full-text).
- Tsigankov P, Gherardini PF, Helmer-Citterich M, Späth GF, Myler PJ, Zilberstein D. (2014) Regulation dynamics of Leishmania
differentiation: deconvoluting signals and identifying phosphorylation trends. Mol.
Cell. Proteomics, 13:1787-1799. (free
full-text).
- Lanni S, Goracci M, Borrelli L, Mancano G, Chiurazzi P, Moscato U, Ferre' F,
Helmer-Citterich M, Tabolacci E, Neri G.
(2013). Role of CTCF Protein in Regulating FMR1 Locus
Transcription. PLoS Genet. 2013
Jul;9(7):e1003601. (free
full-test)
- Bianchi V, Colantoni A, Calderone A,
Ausiello G, Ferrè F, Helmer-Citterich M. (2013). DBATE: DataBase of Alternative Transcripts
Expression. Database, 2013:bat050. (free
full-text)
- Colantoni A, Bianchi V, Gherardini PF, Scalia Tomba G,
Ausiello G, Helmer-Citterich M, Ferrè F. (2013). Alternative splicing tends to avoid partial removals of protein-protein
interaction sites. BMC Genomics, 14:379.
(free full-text)
- Parca L, Ferrè F, Ausiello G, Helmer
Citterich M. Nucleos: a web server for the identification
of nucleotide-binding sites in protein structures. Nucl
Acids Res 2013 May 22. [Epub ahead of print] PubMed
PMID: 23703207 (free
full-text).
- Bianchi V, Mangone I, Ferrè F, Helmer-Citterich M, Ausiello
G. The webPDBinder server for the identification of
ligand binding sites on protein structures. Nucl
Acids Res 2013 Jun 3. [Epub ahead of print] PubMed
PMID: 23737450 (free
full-text).
- Tsigankov P, Gherardini PF, Helmer Citterich M, Spaeth GF, Zilberstein D. (2013). Phosphoproteomic
analysis of differentiating Leishmania parasites reveals unique stage-specific
phosphorylation motif. J Proteome Res., 12:3405-3412.
- Leclercq O, Bartho K, Duelsner E, von Kleist
L, Gherardini PF, Palmeri
A, Helmer-Citterich M, Baumgart S, Spaeth GF. (2013). Enrichment of Leishmania
donovani ATP-binding proteins using a staurosporine capture compound. J Proteomics., 86:97-104.
- Perfetto L, Gherardini PF, Davey NE, Diella F, Helmer-Citterich M, Cesareni G. (2013). Exploring the diversity of SPRY/B30.2-mediated interactions. TiBS, 38(1):38-46. (abstract)
- Tuppo L, Alessandri C,
Pomponi D, Picone D, Tamburrini M, Ferrara R, Petriccione
M, Mangone I, Palazzo P, Liso M, Giangrieco I,
Crescenzo R, Bernardi ML, Zennaro D, Helmer-Citterich M, Mari A,
Ciardiello MA. (2013). Peamaclein
- A new peach allergenic protein: similarities, differences and misleading
features compared to Pru p 3. Clinical And
Experimental Allergy, 43(1):128-140. (abstract)
- Gherardini PF, Helmer-Citterich
M. (2012). Experimental and computational methods for the analysis and
modeling of signaling networks. N. Biotechnol,
S1871-6784(12)00864-3. (abstract)
- Parca L, Gherardini PF, Truglio M, Mangone I, Ferrè F, Helmer-Citterich
M, Ausiello G. (2012). Identification of
nucleotide-binding sites in protein structures: a novel approach based on
nucleotide modularity. PLoS One, 7(11):e50240. (free
full-text)
- Sacco F, Gherardini PF, Paoluzi S, Saez-Rodriguez J, Helmer-Citterich
M, Ragnini A, Castagnoli L, Cesareni
C. Mapping the human phosphatome on growth pathways.
Mol. Syst. Biol., 8:603. (free
full-text)
- Minguez P, Parca L, Diella F, Mende DR,
Kumar R, Helmer-Citterich M, Gavin AC, van Noort
V, Bork P (2012). Deciphering a global network of functionally associated
post-translational modifications. Mol. Syst. Biol, 8:599. (free
full-text)
- Giacò L, Amicosante M, Fraziano M, Gherardini PF, Ausiello G, Helmer-Citterich
M, Colizzi V, Cabibbo A. (2012). B-Pred, a
structure based B-cell epitopes prediction server. Adv Appl Bioinform
Chem, 5:11-21. (free-full-text)
- Fioravanti F, Helmer-Citterich
M, Nardelli E. (2012). Modeling Gene Regulatory Network Motifs using Statecharts. BMC Bioinformatics, 13(Suppl 4):S20. (free
full-text).
- Bianchi V, Gherardini PF, Helmer-Citterich
M, Ausiello G. (2012). Identification of binding
pockets in protein structures using a knowledge-based potential derived from
local structural similarities. BMC Bioinformatics, 13(Suppl 4):S17. (free
full-text).
- Tsigankov P, Gherardini PF, Helmer-Citterich M, Zilberstein D. (2012) What have proteomics taught us about Leishmania
development inside its host? Parasitology, 28:1-12.
- Palmeri A, Gherardini PF, Tsigankov P, Ausiello G, Spaeth GF, Zilberstein
D, Helmer-Citterich M. (2011). PhosTryp: a
phosphorylation sites predictor specific for parasitic protozoa of the family trypanosomatidae. BMC Genomics, 12:614. (abstract,
free
full-text).
- Parca L, Mangone I, Gherardini PF, Ausiello G, Helmer-Citterich M (2011). Phosfinder: a web server for the identification of
phosphate binding sites on protein structures. Nucl.
Acids Res. 39(Web Server issue):W278-282. May 26. [Epub
ahead of print]. (free
full-text)
- Schmidt-Arras,D., Leclercq, O., Gherardini, P.F., Helmer-Citterich,
M., Faigle, W., Loew, D., Spaeth, G. (2011).
Adaptation of a 2D in-gel kinase assay to trace phosphotransferase activities
in the human pathogen Leishmania donovani. J
Proteomics, 74(9):1644-1651. Mar 26. [Epub ahead
of print].
- Via, A., Diella, F.,
Gibson, TJ., Helmer-Citterich, M. (2011). From sequence to structural
analysis in protein phosphorylation motifs. Frontiers in Bioscience, 16:
1261-1275 (free full-text).
- Zanzoni A, Carbajo D, Diella
F, Gherardini PF, Tramontano A, Helmer-Citterich
M, Via A (2011). Phospho3D 2.0: An
enhanced database of three-dimensional structures of phosphorylation sites. Nucl. Acids Res.,
39 (Database issue):
D268-71. Epub 2010 Oct 21 (free
full-text).
- Parca L, Gherardini PF, Helmer-Citterich M,
Ausiello G (2010). Phosphate binding-sites identification in
protein structures. Nucl. Acids Res., 39(4):1231-1242. Oct 24. [Epub ahead of
print] (free
full-text).
- Gherardini, PF, Ausiello, A, Helmer-Citterich, M. (2010).
Superpose3D: a local structural comparison program that allows for user-defined
structure representations. PLoS One, 5(8): e11988 (free
full-text).
- Hem, S, Gherardini, PF, Fortea, JO, Hourdel, V, Morales, MA,
Watanabe, R, Pescher, P, Kuzyk,
MA, Smith, D, Borchers, CH, Zilberstein,
D, Helmer-Citterich, M, Namane, A, Spaeth GF
(2010). Identification of Leishmania-specific protein
phosphorylation sites by LC-MS/MS and comparative genomics analyses.
Proteomics, 21: 3868-6883.
- Yau WL, Blisnick T, Taly JF, Helmer-Citterich
M, Schiene-Fischer C, Leclercq
O, Li J, Schmidt-Arras D, Morales MA, Notredame C,
Romo D, Bastin P, Spaeth GF (2010). Cyclosporin A treatment of Leishmania donovani
reveals stage-specific functions of cyclophilins in parasite
differentiation, proliferation, and viability. PLoS Negl Trop Dis., 4(6):e729 (free
full-text).
- Gherardini, PF, Ausiello, G, Russell, RB, Helmer-Citterich, M
(2010). Modular architecture of nucleotide binding pockets. Nucl.
Acids Res., 38: 3809-3816. [Epub 2010 Feb 25] (free full-text).
- Gould, C., Diella, F.,
Via, A., Puntervoll, P., Gemuend,
C., Michael, S., Sayadi, A., Bryne,
JC., Chica, C., Davey, N., Haslam, N., Budd, A., Hughes, T., Pas, J., Rychlewski, L., Trave', G., Aasland,
R., Helmer-Citterich, M., Linding, R., Gibson,
TJ. (2010) ELM: The status of the 2010 Eukaryotic Linear Motif Resource. Nucl. Acids Res., 38(Database
issue):D167-180. Epub 2009 Nov 17 (free full-text).
- Via, A., Gould, C.M., Gemuend,
C., Gibson, TJ, Helmer-Citterich, M. (2009) A structure filter for the
Eukaryotic Linear Motif Resource. BMC Bioinformatics, 10(1):351 (free
full-text).
- Ausiello, G., Gherardini, P.F., Gatti, E., Incani, O., Helmer-Citterich, M. (2009). Structural
motifs recurring in different folds recognize the same ligand fragments. BMC
Bioinformatics, 10:182 (free full-text).
- Gherardini P.F., Helmer-Citterich
M. (2008). Structure-based function prediction: approaches and
applications. Briefings in Functional Genomics and Proteomics, 7:291-302 (free full-test).
- Ausiello, G., Gherardini,
P.F., Marcatili, P., Tramontano,
A., Via, A., Helmer-Citterich, M. (2008) FunClust:
A web server for the identification of structural motifs in a set of
non-homologous protein structures. BMC Bioinformatics, 9,(Suppl. 2): S1 (free
full-text).
- Gherardini, P.F., Wass, M.N., Helmer-Citterich,
M., Sternberg, M.J. (2007) Convergent evolution of enzyme active sites is
not a rare phenomenon. J. Mol. Biol., 372: 817-845.
- Ferraro, E., Peluso, D., Via, A., Ausiello, G., Helmer-Citterich,
M. (2007) SH3-Hunter: discovery
of SH3 domain interaction sites in proteins. Nucl.
Acids Res., 35:W451-454 (free
full-text).
- Via, A., Peluso, D., Gherardini, P.F., de Rinaldis,
E., Colombo, T., Ausiello, G., Helmer-Citterich,
M. (2007) 3dLOGO: a web server
for the identification, analysis and use of conserved protein substructures. Nucl. Acids Res., 35:W416-419 (free
full-text).
- Ausiello, G., Peluso, D., Via, A., Helmer-Citterich,
M. (2007). Local comparison of protein structures highlights cases of
convergent evolution in analogous functional sites. BMC Bioinformatics,
8(Suppl.1): S24 (free full-text).
- Via, A., Gherardini, P.F., Ferraro, E., Ausiello, G., Scalia Tomba, G.
and Helmer-Citterich, M. (2007). False occurrences of functional motifs
in protein sequences highlight evolutionary constraints. BMC Bioinformatics,
8:68 (free-fulltext).
- Zanzoni, A., Ausiello,
G., Via, A., Gherardini, P.F., Helmer-Citterich,
M. (2007). Phospho3D: a database
of three-dimensional structures of protein phosphorylation sites. Nucl. Acids Res., 35:D229-D231 (free
full-text).
- Ferraro, E., Via, A., Ausiello, G., Helmer-Citterich,
M. (2006) A novel structure-based encoding for machine-learning applied to
the inference of SH3 domain specificity. Bioinformatics, 22:2333-2339.
- Ferraro, E., Via, A., Ausiello, G., Helmer-Citterich, M. (2005). A neural strategy for the inference of SH3 domain-peptide interaction
specificity. BMC Bioinformatics, 6(Suppl 4):S13 (free full-text).
- Ausiello, G., Via, A., Helmer-Citterich, M.
(2005). Query3d: a new method for high-throughput analysis of functional
residues in protein structures. BMC Bioinformatics, 6(Suppl 4):S5 (free
full-text).
- Ferre', F., Ausiello, G.,
Zanzoni, A., Helmer-Citterich, M. (2005).
Functional annotation by identification of local surface similarities: a novel
tool for structural genomics. BMC Bioinformatics, 6:19. (free
full-text)
- Ausiello, G., Zanzoni,
A., Peluso, D., Via, A., Helmer-Citterich, M. (2005) pdbFun:
Mass selection and fast comparison of annotated PDB residues. Nucl.Acids Res., 33:133-137. (free
full-text)
- Via, A., Zanzoni, A., Helmer-Citterich, M
(2005). Seq2Struct: a resource for establishing sequence-structure links. Bioinformatics,
21:551-552. Epub 2004 Sep 28.
- Via, A, Helmer-Citterich, M (2004). A structural study for the optimisation of functional motifs encoded in protein
sequences BMC Bioinformatics, 5, 50. (abstract,
free
full-text)
- Ferrè, F., Ausiello, G., Zanzoni, A., Helmer-Citterich, M. (2004). SURFACE: a
database of protein surface regions for functional annotation (abstract,
freefull-text).
Nucl.Acids Res., 32,
240-244.
- Ferrè, F., Via, A., Ausiello, G., Brannetti, B., Zanzoni,
A., Helmer-Citterich, M. (2003). Development
of computational tools for the inference of protein interaction specificity
rules and functional annotation using structural information. Comparative and
Functional Genomics, 4, 416-419 . (abstract)
- Cesareni, G., Helmer-Citterich, M. (2003)
Searching the MINT database for protein interaction information. Curr Protoc Bioinformatics,
Chapter 8:Unit 8.5., John Wiley & Sons, Inc.
- Brannetti, B., Helmer-Citterich, M. (2003) iSPOT: a web tool to infer the interaction specificity of
families of protein modules. (abstract,
free
full-text) Nucl. Acids Res., 31:
3709-3711.
- Puntervoll, P., Linding,
R., Gemuend, C., Chabanis-Davidson,
S., Mattingsdal, M., Cameron, S., Martin, D.M.A., Ausiello, G., Brannetti, B., Costantini, A., Ferrè, F., Maselli, V., Via, A., Cesareni,
G., Diella, F., Superti-Furga,
G., Wyrwicz, Ramu, C.,
McGuigan, C., Gudavalli, R., Letunic,
I., Bork, P., Rychlewski, Kuester, B., Helmer-Citterich,
M., Hunter, W.N., Aasland, R. and Gibson, T.
(2003) ELM server: a new resource for investigating short functional sites in
modular eukaryotic proteins. (abstract,
free full-text)
Nucl. Acids Res., 31: 3625-3630
- Politou, A.S., Spadaccini,
R., Joseph, C., Brannetti, B., Guerrini, R., Helmer-Citterich,
M., Salvadori, S., Temussi, P.A. and Pastore, A.
(2002). The SH3 domain of nebulin binds selectively to type II peptides:
theoretical prediction and experimental validation. J Mol Biol. 316:305-315. (abstract)
- Zanzoni, A.,
Montecchi-Palazzi, L., Quondam, M., Ausiello, G., Helmer-Citterich, M.
and Cesareni, G. (2002). MINT: a Molecular INTeraction database. FEBS Letters.513, 135-140. (abstract)
- Brannetti, B., Zanzoni,
A., Montecchi Palazzi, L., Cesareni,
G. and Helmer-Citterich, M. (2001). iSPOT: a
web tool for the analysis and recognition of protein domain specificity. Comparative
and Functional Genomics, 2,
314-318.
- Vaccaro, P., Brannetti, B., Montecchi Palazzi, L., Philipp, S., Helmer
Citterich, M., Cesareni, G. and Dente, L. (2001). Distinct
binding specificity of the multiple PDZ domains of the human INADL, a human
protein with homology to INAD from Drosophila melanogaster. (abstract,
free full-text)
J.Biol.Chem., 276, 42122-42130.
- Citarella, F., Velthuis,
H., Helmer Citterich, M. and Hack, C.E. (2000). Identification of a
binding site for negatively charged surfaces in the fibronectin type II domain
of human factor XII: an immunochemical and homology modeling approach.
Thrombosis and Haemostasis, 84:1057-1065. (abstract)
- Via, A., Ferrè F., Brannetti,
B. and Helmer Citterich, M. (2000) Protein surface similarities: a
survey of methods to describe and compare protein surfaces. Cell. Mol.Life Sci., 57, 1970-1977. (abstract)
- Via, A., Ferrè, F., Brannetti,
B., Valencia, A. and Helmer Citterich, M. (2000). 3D view of the surface
motif associated to the Ploop structure: cis and
trans cases of convergent evolution. J.Mol.Biol.,
303, 455-465. (abstract)
- Brannetti, B., Via, A., Cestra,
G., Cesareni, G. and Helmer Citterich, M. (2000)
SH3-SPOT: an algorithm to predict preferred ligands of different members of the
SH3 gene family. J.Mol.Biol, 298, 313-328. (abstract)
- De Rinaldis, M., Ausiello, G., Cesareni, G. and Helmer Citterich, M. (1998)
Three-dimensional profiles: a new tool to identify protein surface
similarities. J.Mol.Biol., 284,1211-1221. (abstract)
- Soucek, L., Helmer Citterich, M.,
Sacco, A., Jucker, R., Cesareni, G. and Nasi, S.
(1998) Design and properties of a Myc derivative that
efficiently homodimerizes. Oncogene, 17:2463-2472. (abstract)
- Murali, R., Helmer Citterich, M., Sharkey, D.J., Scalice, E., Daiss, J. and
Murthy, K. (1998) Structural studies on a inhibitory antibody against Thermus
aquaticus DNA polymerase suggest mode of inhibition. (abstract,
full-text)
Prot. Eng., 11(2):79-86.
- Quondam,M., Barbato,C.,
Pickford,A., Helmer Citterich,M.
and Macino,G. (1997) Structural conservation in prenyltransferases: structural analysis and modeling of Neurospora
crassa geranylgeranyl pyrophosphate synthase. (abstract,
free full-text)
Prot. Eng., 10, 1047-1055.
- Pazos,F., Helmer Citterich,M.,
Ausiello,G. and Valencia,A.
(1997).Protein docking with sequences. Correlated mutations contain information
about protein-protein interaction. J.Mol.Biol., 271,
511-523. (abstract)
- Ausiello,G., Cesareni,G.
and Helmer Citterich,M. (1997). ESCHER: a new
docking procedure applied to the reconstruction of protein tertiary structure.
Proteins, 28, 556-567. (abstract)
- Zappavigna,V., Falciola,L.,
Helmer Citterich,M., Mavilio,F.
and Bianchi,M.E. (1996) HMG1 cooperates with HOX
proteins in DNA binding and transcriptional activation. EMBO Journal, 15, 4981
- 4991. (abstract,
free
full-text)
- Helmer Citterich,M., Rovida,E., Luzzago,A. and Tramontano,A. (1995). Modelling antibody antigen
interactions: ferritin as a case study. Molecular Immunology, 32, 1001-1010. (abstract)
- Helmer Citterich,M. and Tramontano,A. (1994). PUZZLE: a new method for automated
protein docking based on surface shape complementarity. J.Mol.Biol.,
235, 1021-1031. (abstract)
- Marvin,D.A., Hale,R.D.,
Nave,C. and Helmer Citterich,M.
(1994). Molecular models and structural comparisons of native and mutant class
I filamentous bacteriophages Ff (fd, f1, M13), If1
and IKe. J.Mol.Biol., 235,
260-286. (abstract)
- Cesareni, G., Helmer Citterich, M.
and Castagnoli, L. (1991). Control of ColE1 replication by antisense RNA. TIG,
7, 230-235. (abstract)
- Helmer Citterich,M., Anceschi,M., Banner,D.W. and Cesareni,G. (1988). Control of ColE1 replication: Low
affinity specific binding of Rop to RNAI and RNAII.
EMBO Journal, 7, 557-566. (abstract,
free
full-text)
- Burger,G., Helmer Citterich,M.,
Nelson,M.A., Werner,S. and Macino,G. (1985). RNA processing in Neurospora crassa mitochondria: transfer RNAs punctuate a large
precursor transcript. EMBO Journal, 4,197-204. (abstract,
free
full-text)
- Helmer Citterich,M., Morelli,G. and Macino,G. (1983).
Nucleotide sequence and intron structure of the apocytochrome b gene of Neurospora
crassa mitochondria. EMBO Journal, 2,1235-1242. (abstract,
free full-text)
Helmer Citterich M, Ferrè F,
Pavesi G, Romualdi C, Pesole G (2018) Fondamenti di Bioinformatica – ed Zanichelli
Valle, G., Helmer-Citterich, M., Attimonelli, M., Pesole, G. (2003) Introduzione alla
Bioinformatica - ed. Zanichelli
The Internet for Cell
and Molecular Biologists - ed. A. Cabibbo,
R.P. Grant, M. Helmer-Citterich, Horizon Scientific Press, 368 pages,
Publication date: April 2002 ISBN: 1-898486-32-8 (hbk).
- Cesareni,G., Minenkova,O.,
Dente,L., Iannolo,G., Zucconi,A., Helmer Citterich,M.,
Lanfrancotti, A., Castagnoli,L.
and Vetriani,C. (1995). Phage
display of peptide libraries: Structural and functional constraints in the
display of peptides on filamentous phage capsids. in Combinatorial Libraries:
Synthesis, screening and application potential. Cortese,R.
ed., de Gruyter.
- Pizzi, E., Helmer-Citterich, M., Tramontano, A. (1994). Structural and dynamic models of biomedicl
interest. in: A. Colosimo (ed.) Structural and
dynamic models of biomedical interest, CISB, Rome.
- Cesareni, G., Castagnoli,
L., Felici, F., Helmer Citterich, M., Jappelli , R., Tataseo, P., Gonfloni, S. and Musacchio, A.
(1990) Protein vectors and oligopeptide libraries for the selection of clones
with specific binding properties. In Recombinant DNA technologies in Industry
and Agriculture: state of the art in Italy. Amaldi, F.,
De Felice, M., Di Fonzo, N., Merlin, P., Polsinelli, M. and Viotti, A. ed., pg.332-339.
- Cesareni,G., Anceschi,M.,
Castagnoli,L., Felici,F., Helmer
Citterich,M., Hughes,J.,
Kirk,D., Murray,J., Rossi,N., Scarpa,M. and Spinelli,L.(1986). E.coli plasmid stability and control of copy number. Fifth International
Symposium on the Genetics of Industrial Microorganisms, 1986, M.Alacevic, D.Hranueli, Z.Toman (eds);
- Macino,G., Helmer Citterich,M., Morelli,G. and Nelson,M.A. (1984). The ATPase subunit 6 and 8 genes of Neurospora
crassa mitochondria. in "H-ATP synthase:
structure, function, regulation" ed: S.Papa, K.Altendorf, L.Ernster, L.Packer - ICSU Press and Adriatica
Editrice.
- Helmer Citterich,M., Morelli,G., Nelson,M.A. and Macino,G. (1983). Expression of split genes of the Neurospora
crassa mitochondrial genome. in
"Mitochondria 1983", ed.R.J. Schweyen, K.Wolf, F.Kaudewitz, 357-369.
- Facchiano A, Angelini C, Bosotti
R, Guffanti A, Marabotti A, Marangoni R, Pascarella
S, Romano P, Zanzoni A, Helmer-Citterich M.
(2015). Preface: BITS2014, the annual meeting of the Italian
Society of Bioinformatics. BMC Bioinformatics.
2015;16 Suppl 9:S1 (free full-text)
- Gissi C, Romano P, Ferro
A, Giugno R, Pulvirenti A, Facchiano A, Helmer-Citterich M. (2013).
Bioinformatics in Italy: BITS 2012, the ninth annual meeting of the Italian
Society of Bioinformatics. BMC Bioinformatics. 2013;14 Suppl 7:S1 (free
full-text)
- Romano P, Helmer-Citterich M. (2012).
Bioinformatics in Italy: BITS2011, the Eighth Annual Meeting of the Italian
Society of Bioinformatics. BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:I1
(free full-text)
- Casadio, R., Helmer-Citterich,
., Pesole, G. (2007). Bioinformatics in Italy:
BITS2006, the third annual meeting of the Italian Society of Bioinformatics.
BMC Bioinformatics, 8 (Suppl.1): S1 (free full-text).
- Helmer-Citterich, M., Casadio, R., Guffanti, A., Mauri, G., Milanesi,
L., Pesole, G., Valle, G., Saccone,
C. (2005). Overview of BITS2005, the Second Annual Meeting of the Italian
Bioinformatics Society. BMC Bioinformatics, 6(Suppl 4):S1 (free
full-text).
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Barton,G., Jones,D., Sippl,M., Valencia,A., Lesk,A., Moult,J., Rost,B., Sander,C., Schneider,R., Lahm,A., Leplae,R., Buta,C., Eisenstein,M., Fjellstr^m,O., Floeckner,H., Grossman,G., Hansen,J., Helmer Citterich,M.,
Joergensen,F.S., Marchler-Bauer,
A., Osuna,J., Park,J., Reinhardt,A., Ribas de Pouplana,L., Rojo-Dominguez,A., Saudek,V., Sinclair,J., Sturrock,S., Venclovas,C., Vinals,C. (1996). Update on protein structure prediction:
results of the IRBM 1995 workshop. Folding and
Design, 1, 55-63.
- Helmer Citterich,M. (1988). Il presunto
secondo codice. Sapere, 8/9, 79-84.